Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIVFFDVDGTLVGET-KEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKELDINSYICYNGQYVIFE-GKEIYAKPLPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTIGMNSIK--REYPKVDANY-YKGRDIYQCLLFCDESY-DAYYREEFKQYGFLRWHDVS-VDVCPADGSKAEGIKQMIKKLGFSMKDTYAFGDGLNDIAMLQTVGTGVAMGNGRDEVKAVADYVTSHVDDDGVYNALKQLKLI
3R4C Chain:A ((11-268))
MIKVLLLDVDGTLLSFETHKVSQSSIDALKKVHDSGIKIVIATGRAASDLHEID-AVPYDGVIALNGAECVLRDGSVIRKVAIPAQDFRKSMELAREFDFAVALELNEGVFVNRLT-PTV-EQIAGIVEHPVPPVVDIEEMFERKECCQLCFYFDEEAEQK-VMPLLSGLSAT-RWHPLFADVNVAGTSKATGLSLFADYYRVKVSEIMACGDGGNDIPMLKAAGIGVAMGNASEKVQSVADFVTDTVDNSGLYKALKHFGVI
General information:
TITO was launched using:
RESULT:
Template:
3R4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149298 for 2149 contacts (-69.5/contact) +
2D Compatibility (PS) -27924 + (NN) -18632 + (LL) 352
1D Compatibility (HY) -19600 + (ID) 3700
Total energy: -218802.0 ( -101.82 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_3R4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R4C-query.scw
PDB file :
Tito_Scwrl_3R4C.pdb
: