Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVTHSKNGYYDGLIFHRVIPEFMIQGGDPDGRGTGGESIWGESFEDEFSTEAFN-LRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTG-MQDKPVNDVVIEKINIK
1ZKC Chain:A ((16-174))
----------PRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCA---------------------------YLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF
General information:
TITO was launched using:
RESULT:
Template:
1ZKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57627 for 1235 contacts (-46.7/contact) +
2D Compatibility (PS) -16457 + (NN) -6200 + (LL) 2280
1D Compatibility (HY) -10400 + (ID) 3500
Total energy: -91904.0 ( -74.42 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_1ZKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZKC-query.scw
PDB file :
Tito_Scwrl_1ZKC.pdb
: