Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGR-GGPGYKFADEFHPELQFDKPYLLAMANA-GPGTNGSQFFITVGKTPHLNR--------RHTIFGEVIDAESQRVVEAISKTATDGN--DRPTDPVVIESITIS
3S6M Chain:A ((3-167))
-------------GSMVELHTNHGVIKLELDEAKAPKTVENFLNYVK---------------KGHYDGTIFHRVINGFMIQGGGFEPGLKQKPTDAPIANEANNGLKN-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVE--GQDIVDKIKAVKTGS-HQDVPNDDVVIEKAVVV
General information:
TITO was launched using:
RESULT:
Template:
3S6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84051 for 1239 contacts (-67.8/contact) +
2D Compatibility (PS) -16404 + (NN) -12944 + (LL) 264
1D Compatibility (HY) -12000 + (ID) 2950
Total energy: -128085.0 ( -103.38 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3S6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S6M-query.scw
PDB file :
Tito_Scwrl_3S6M.pdb
: