Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGL-SVPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKG-HALLKSKHPGDALFAFLRSMVLQWGATDRGLVEALAGVG-IEISSAAPEAEADFLDLLTDLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQSYNAELAAKVTDVALDGLRANRK
3VUQ Chain:A ((8-186))
---------AGVKDKKRAILEATLAVLRERGLSGLKMEEVARRAEVGKGTIYLYFRDKRDLLKALVEERTWAFYREVEEVVRRKAPFFVRLEEVLRRRLAW-VQEWRGLWAAVAREAMDDPTPWLKGLHEHYLRLLEELLRSGQSEGAVRTGLSPRATAAVIAAMGCTPS-VEAYLEHLMEVLRKGVE----
General information:
TITO was launched using:
RESULT:
Template:
3VUQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99267 for 1159 contacts (-85.6/contact) +
2D Compatibility (PS) -19332 + (NN) -12984 + (LL) 1156
1D Compatibility (HY) -10400 + (ID) 2050
Total energy: -142877.0 ( -123.28 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_3VUQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VUQ-query.scw
PDB file :
Tito_Scwrl_3VUQ.pdb
: