Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVHGFLLERVSVVRDE-ATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSGKVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCLGQSAR----------------EAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA
4MYC Chain:A ((435-610))
----DITFENVTFGYHPDRKILKNASFTIPAGWKTAIVGSSGSGKSTILKLVFRFYDPESGRILINGRDIKEYDIDALRKVIGVVPQDTPLFNDTIWENVKFGRIDATDEEVITVVEKAQLAPLIKKLPQGFDTIVGERGLMISGGEKQRLAIARVLLKN-----------ARIMFFDEATSALDTHTEQA---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4MYC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83526 for 1098 contacts (-76.1/contact) +
2D Compatibility (PS) -17043 + (NN) -7805 + (LL) 6836
1D Compatibility (HY) -8000 + (ID) 2100
Total energy: -111638.0 ( -101.67 by residue)
QMean score : 0.336
(partial model without unconserved sides chains):
PDB file :
Tito_4MYC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MYC-query.scw
PDB file :
Tito_Scwrl_4MYC.pdb
: