Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADPRPDPDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLISDHLNLT-ARSPLV-------GGEFVDLTDAYSPRLRELARQSD----PQLAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAGITGEPLSHAEVLAAGAASATRMGALLADVIARF
4LNA Chain:A ((23-293))
-------MFEQIQETTQFIQSKIT-LRPAIGIILGTGLGALTNELDID-TTIPYETIPHFPLSTV---SGKLLIGTLGGKSVVVMQGRFHYYEGYTMQQVTYPVRVMHALGIQTLLVSNAAGGMNPTFQTSDLMVIDDHISLLLPQNPLICPNPPIFGDRFPDMSEPYRKSLIDLAFSVAAELDIPLKRGVYVSVTGPQLETRAEYRMLRQWGADAVGMSTVPEVIVANQLGMDVFGISVITDLCFPDTLEKAELVKILATAAQAEPKLTMLIREMIGRL
General information:
TITO was launched using:
RESULT:
Template:
4LNA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162373 for 2166 contacts (-75.0/contact) +
2D Compatibility (PS) -27984 + (NN) -12053 + (LL) 292
1D Compatibility (HY) -21200 + (ID) 4450
Total energy: -227768.0 ( -105.16 by residue)
QMean score : 0.706
(partial model without unconserved sides chains):
PDB file :
Tito_4LNA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LNA-query.scw
PDB file :
Tito_Scwrl_4LNA.pdb
: