Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDRMRGVKSDSPEQESADDALKRIVDGFQHFRREVFPEQQALFKKLANSQRPRAMFITCADSRIVPELITQSSPGDLFVTRNVGNVVPPYGQMNGGVSTAIEYAVLALGVHHIIVCGHSDCGAMRAVLDPQTLERMPTVKAWLRHAEVARTVVADNCDC-GASHDTLGVLTEENVVAQLDHLRTHPSVASRLASG-QLFIHGWVYDIESAQIRAYDAKQGRFLPLDGEHPVPMATPAPRYLSS
1DDZ Chain:A ((31-226))
----------------QAMPGKSNIFANNEAWRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHSD---ISFLSVLQYAVQYLKVKHILVCGHYGCGGAKAALGDSR---LGLIDNWLRHIRDVRRMNAKYLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQGVVYGVGDGKLRDLGVVVNSSDDISKFYRTKSDSGALKAGNP
General information:
TITO was launched using:
RESULT:
Template:
1DDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108730 for 1405 contacts (-77.4/contact) +
2D Compatibility (PS) -20831 + (NN) -10789 + (LL) 1168
1D Compatibility (HY) -15600 + (ID) 2850
Total energy: -157632.0 ( -112.19 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_1DDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DDZ-query.scw
PDB file :
Tito_Scwrl_1DDZ.pdb
: