Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
1V9T Chain:A ((2-165))
-----------------------KGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL
General information:
TITO was launched using:
RESULT:
Template:
1V9T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78080 for 1341 contacts (-58.2/contact) +
2D Compatibility (PS) -17393 + (NN) -3386 + (LL) 2480
1D Compatibility (HY) -17200 + (ID) 5350
Total energy: -118929.0 ( -88.69 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1V9T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V9T-query.scw
PDB file :
Tito_Scwrl_1V9T.pdb
: