Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGAD--------LLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRL-----------------LDIDVERRPYPSPMLVGTFALAPCVAERNRLYVDSQGGLAYFYPIGFDRARLVVSF-PREEARELMADTRGESLRRRLQRFVGD-----ESAEAIAAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDALAGYQAERFPVNQAIVSYGHALATSLEDRQRFAGVFDTALQGSSRTPEALGGERSYQPVRSPAPLG |
| 4J33 Chain:A ((22-411)) | MSE---SVAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKSIDPDACEHILQDMIPMKGRMIHDLKG----RQESQLYGEAINSINRSVLNNSLLDELE-KSTTELKFGHKLVKIEWTDDKQICHFAIGTPHTEKYDFVIGCDGAYSATRSQMQRKVEMDFSQEYMNLRYIELYIPPTEEFKPNYGGNFAIAP-----DHLHIWPRHKFMLIALANSDGSFTSTFFGSKDQISDLITS--KSRVREFLIENFPDIINIMDLDDAVKRFITYPKESLVCVNCKPY-DVPGGKAILLGDAAHAMVPFYGQGMNCGFEDVRILMALLKKHSGD---RSRAFTEYTQTRHKDLVSITELAKRNYKEMSHDVT---------------------SKRFLLRK------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4J33.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -164363 for 2839 contacts (-57.9/contact) +
2D Compatibility (PS) -38194 + (NN) -16972 + (LL) 2060
1D Compatibility (HY) -8400 + (ID) 3100
Total energy: -228969.0 ( -80.65 by residue)
QMean score : 0.477
|
|
|