Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQATCARIARRFVWRNRMPRRLFIGLFLLPLPLFAAPPKDELAYAVGARLGMRLQQEMPGLELSELLLGLRQAYRGEALEIPPERIEQLLLQHENATTETPRTTPAEARFLANEKARFGVR-ELTGGVLVSELRRGQGN-GIGAATQVHVRYRGLLADGQVFDQSES---AEWFAL--DSVIEGWRTALRAMPVGARWRVVIPSAQAYGHEGAGDLIPPDAPLVFEIDLLGFR
3O5Q Chain:A ((3-126))
------------------------------------------------------------------------------------------------------------PATVTEQG--EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK
General information:
TITO was launched using:
RESULT:
Template:
3O5Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85976 for 875 contacts (-98.3/contact) +
2D Compatibility (PS) -12327 + (NN) -1762 + (LL) 9336
1D Compatibility (HY) -8000 + (ID) 1800
Total energy: -100529.0 ( -114.89 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3O5Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O5Q-query.scw
PDB file :
Tito_Scwrl_3O5Q.pdb
: