Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFTLPELPYDKTALEPYISAKTLDFHYDKHHKGYLNKLNELIENTDYQNVKIEELIMKVHGNSDEVPVFNNAAQVWNHTFYWNSMKKSGGDKPKEDGLLAKKIQDDIGGFDKFHEEFFNHGIGQFGSGWVWLVLE-RGKLKITKTPNADLPLIYDQVPLLTMDVWEHAYYLDCQNRRIDYIKIFLDHLINWDFAEENLKKNT
2NYB Chain:A ((1-191))
-SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRS-----SEGGVFNNAAEVWNHTFYWNCLAPNAGGEPT--GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNLAA--
General information:
TITO was launched using:
RESULT:
Template:
2NYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110071 for 1514 contacts (-72.7/contact) +
2D Compatibility (PS) -20019 + (NN) -7932 + (LL) 100
1D Compatibility (HY) -18000 + (ID) 4750
Total energy: -160672.0 ( -106.12 by residue)
QMean score : 0.621
(partial model without unconserved sides chains):
PDB file :
Tito_2NYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NYB-query.scw
PDB file :
Tito_Scwrl_2NYB.pdb
: