Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRIQRNKIKVEIKKLSHGKDLPLPCYATMQSAGMDLYAALGNSIVLNPLERLLIPTGIVIVIPNGFEGQIRPRSGLAAKYGITVLNSPGTIDSDYRGEVKVCLINLS-NQPYEIKRGDRIAQILIAPVFRVIWDDAERLCTEETERSAGGFGSSGR
1SJN Chain:A ((3-132))
--------TTLAIVRL--DPGLPLPSRAHDGDAGVDLYSAED--VELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDE---------------
General information:
TITO was launched using:
RESULT:
Template:
1SJN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91881 for 868 contacts (-105.9/contact) +
2D Compatibility (PS) -13628 + (NN) -1497 + (LL) 520
1D Compatibility (HY) -10000 + (ID) 2850
Total energy: -119336.0 ( -137.48 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1SJN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SJN-query.scw
PDB file :
Tito_Scwrl_1SJN.pdb
: