Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRGDFAFKIIKQSNSARAGTIKTPSGNIETPAFIFCATRAAIKAADIERISEAGTQIILSNTYHLMLQPGENTVAKLGGLRKMMGWNGPMLTDSGGYQIFSLGHGSVSEEIKGIRKKQKTLIKIDEDGAIFRSYINGKAYCLTPERSIQIQQKLGADLILVLDECTPFHVSKEYTRRSMLMSHKWAERSLNEFGKDDNGKQ--ALYGISQGGVYRDLRRESCYFINNLPFFGQAIGG---SLGRSKEQMYDVVSFTMEHLKKDRPTHLLGIGRIVDIFYAVEAGIDTFDCVHPTRLARHGGALIKVKNRNTISSRYKEHINLRNQQFELDGNPIEGDCLCFTCRKYSRAYIHHLLKTKELLAYTLITIHNVFFMNKLMKSIRQAILDDRLDQEKSNWVGEV- |
| 1K4G Chain:A ((11-382)) | -RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSL----------------TKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAV--GEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTW-----------DGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYF |
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General information:
TITO was launched using:
| RESULT:
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Template: 1K4G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210395 for 3248 contacts (-64.8/contact) +
2D Compatibility (PS) -39041 + (NN) -11687 + (LL) 2228
1D Compatibility (HY) -27200 + (ID) 7950
Total energy: -294045.0 ( -90.53 by residue)
QMean score : 0.505
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