Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIERTLSILKPDTVKNNIIGNINSYIEKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAECELV-----
1NLK Chain:R ((1-143))
-AIERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIHSYPYQ
General information:
TITO was launched using:
RESULT:
Template:
1NLK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56535 for 1072 contacts (-52.7/contact) +
2D Compatibility (PS) -14798 + (NN) -3066 + (LL) 208
1D Compatibility (HY) -12400 + (ID) 4000
Total energy: -90591.0 ( -84.51 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1NLK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NLK-query.scw
PDB file :
Tito_Scwrl_1NLK.pdb
: