Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNFKYLFVLMLAVIVFAAACGNSSSLDNQKNASNDSDSKSGGYKPKELTVQFVPSQNAGTLEAKAKPLEKLLSKELGIPVKVSVSTNYNTIVEAMKSKKVDVGFLPPTAYTLAHDQKAADLLLQAQRFGVKEDGSASKELVDSYKSEILVKKDSKIKSLKDL----KGKKIALQDVTSTAGYTFPLAML-KNEAGINATKDMKIVNVKGHDQAVISLLNGDVDAAAVFNDARNTVKKDQPNVFKDTRILKLTQAIPNDTISVRPDMDKDFQEKLKKAFIDIAKSKEGHKIISEVYSHEGYTETKDSNFDIVREYEKLVKDMK |
| 3N5L Chain:A ((2-265)) | --------------------------------------------DQPVINFGIISTESSQNLKSIWEPFLKDMSQQTGYQVKAFFAPDYAGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQTVAA----------SGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAK-NNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLA-DLQWSKFQASDDDQLLPIRQLELFKQ--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N5L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -47250 for 2236 contacts (-21.1/contact) +
2D Compatibility (PS) -27640 + (NN) -7367 + (LL) 2788
1D Compatibility (HY) -12000 + (ID) 2750
Total energy: -94219.0 ( -42.14 by residue)
QMean score : 0.395
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