Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTYNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGE-PLTEKTLNACKRADAILLGAIGGPKWTDPNNR---PEQGLLKLRKSLNLFANIRPTTVVKGASSLSPLKEERVEGTDLVIVRELTSGIYFGEPRHFNNHEALDSL---------TYTREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSKLWRKVVNEVSQLY--PEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQTTADL----GGKLNTTDIFEILSQKLNH |
| 2AYQ Chain:A ((1-356)) | MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAG-TPLPEETLDICRRSDAILLGAVGGPKWDHNPASLRPE-KGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERR-GP-----GENEVVDTLAYTREEIERIIEKAFQLAQIRR-KKLASVDKANVLESSRMWREIAEETAK-KYP-DVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKLN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AYQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185436 for 2939 contacts (-63.1/contact) +
2D Compatibility (PS) -36343 + (NN) -21353 + (LL) 700
1D Compatibility (HY) -29200 + (ID) 8650
Total energy: -280282.0 ( -95.37 by residue)
QMean score : 0.568
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