Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNA----FLHFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLE-----NIDLNYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQIL--------NQKTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
2VXN Chain:A ((5-249))
PQPIAAANWKCNGTTASIEKLVQVFNEHTI-SHDVQCVVAPTFVHIPLVQAKLRNPKYVISAQNAI-AKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQT--AKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPE-FRDIIDAT
General information:
TITO was launched using:
RESULT:
Template:
2VXN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123536 for 1909 contacts (-64.7/contact) +
2D Compatibility (PS) -23988 + (NN) -4945 + (LL) -24
1D Compatibility (HY) -13600 + (ID) 3650
Total energy: -169743.0 ( -88.92 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_2VXN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VXN-query.scw
PDB file :
Tito_Scwrl_2VXN.pdb
: