Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND
3TO5 Chain:A ((14-132))
-KILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK-GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE---
General information:
TITO was launched using:
RESULT:
Template:
3TO5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73403 for 911 contacts (-80.6/contact) +
2D Compatibility (PS) -13430 + (NN) -9517 + (LL) 24
1D Compatibility (HY) -14000 + (ID) 3000
Total energy: -113326.0 ( -124.40 by residue)
QMean score : 0.708
(partial model without unconserved sides chains):
PDB file :
Tito_3TO5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TO5-query.scw
PDB file :
Tito_Scwrl_3TO5.pdb
: