Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKRQLGNAGLVTSELGFGCMGLNYHRGPAKDRNEMIEVVRTAMDAGITMFDTAEVYGPYTNEELVGEALVG---KRNHVQIATKGGFKINGLNNEVDSRPESIKAAVEGSLKRLKTDYIDLYYIHRIDPSI-PIEEVAGTIQNLKQEGKILHWGLSEASAKTIRRAHKV--EPLAAVESEYSIWWREAEKEVFPVLEELGIGLVAYSPLGRGYLTGKLDINADFNANDNRGGLPRFQKEAMEANQVLLDFMKEIADEQNVTTAQLALAWILDQKPWIVPIPGTTRPSRIEENIASTEIHFDDGARQKIADALSQIEIVGDRYSAAENKRIGK |
| 3O0K Chain:A ((26-282)) | VPTVKL-NDGNHIPQLGYGVWQI--------SNDEAVSAVSEALKAGYRHIDTATIYG---NEEGVGKAINGSGIARADIFLTTKLWNS--------DQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQD--ELRLFHGKHDIATEAWSPLGQG-LLED-------------------------------PTLKSIAEKHAKSVAQIILRWHIETG--NIVIPKSITPARIKENFDIFDFTLNGTDHDAITKL--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3O0K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123922 for 2149 contacts (-57.7/contact) +
2D Compatibility (PS) -26847 + (NN) -6881 + (LL) 3632
1D Compatibility (HY) -11200 + (ID) 3900
Total energy: -169118.0 ( -78.70 by residue)
QMean score : 0.536
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