Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNRFFRNAIFYVIIFLVIIGIVASFNSNKEAAKDISYSEFVSKLEDGKVKSVEIQPDRSVYTINGEFKSSDKSSDDKKTGLGQSKTSSTAFTTYALNSDTSLGDLQKTLDKEDVKMNVVPAKQNSGWVTFLTSIVPFVIIFILFFFLMSQSQGGGGGKVMSFGKSKAKLYNDDKKKVRFTDVAGADEEKQELVEVVEF-LKDPRKFAELGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGG-NEGIIIIAATNRADVLDPALLRPGRFDRQIMVDRPDVKGREAVLRVHARNKPLA-KSVDLKAIAQRTPGFSGADLENLLNEAALVAARSDKK--EIDMSDLDEASDRVIAGPAKKNRVISEKERRTVAYHEGGHVIVGMVLDEAEVVHKVTIVPRGQAGGYAVMLPKEDRFLMTKAELMDRITGLLGGRVAEEVTFGEVTTGASNDFERATELARRMVTEWGMSDKIGPLQFTSGNGQVFMGRDFGSDKGYSDKIAYEIDTEVQSLIRYCYDRAKTIITEHQEQHKLIAETLLKVETLDARQIRSLFDDGVMPPDIDTIDVEAEYPSEKDEEVAGKSFEEEREELKEEEKVEETQEEPKEVTSEDAPNIEQTPNDKKDE |
| 3D8B Chain:A ((78-337)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQ---------ESSRRIKTEFLVQLDG---SEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTVRPIAYIDFENAFRTVRPS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3D8B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -111531 for 1816 contacts (-61.4/contact) +
2D Compatibility (PS) -26238 + (NN) -16045 + (LL) 27352
1D Compatibility (HY) -17200 + (ID) 4050
Total energy: -147712.0 ( -81.34 by residue)
QMean score : 0.602
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