Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---LNVRANRVSEQMKKELGDILNRKIKDPRLG-FVTVTGVDVTGDLQEAKVFISILGT--DKEKENTLLALAKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYGNRIDELLRDLNNDQ
1KKG Chain:A ((1-108))
MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMR------------
General information:
TITO was launched using:
RESULT:
Template:
1KKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31525 for 690 contacts (-45.7/contact) +
2D Compatibility (PS) -10977 + (NN) -5354 + (LL) 668
1D Compatibility (HY) -9600 + (ID) 2350
Total energy: -59138.0 ( -85.71 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_1KKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KKG-query.scw
PDB file :
Tito_Scwrl_1KKG.pdb
: