Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLQGKVAVVTGGSRGIGRDIAINLAKEGANIFFNYNGSPEAAEETAKLVAEHGVEVEAMKANVAIAEDVDAFFKQAIERFGRVDILVNNAGITRDNLLMRMKEDEWDDVININLKGTFLCTKAVSRTMMKQRAGKIINMASVVGLIGNAGQANYVASKAGVIGLTKTTARELAPRGINVNAVAPGFITTDMTDKLDEKTKEAMLAQIPLGAYGTTEDIANAVLFLASDASKYITGQTLSVDGGMVM
3GED Chain:A ((2-230))
----NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRS-ADF----AKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIK-NKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-DVLVNCIAPGWINVT---EFTQE----DCAAIPAGKVGTPKDISNMVLFLCQQ--DFITGETIIVDGGMS-
General information:
TITO was launched using:
RESULT:
Template:
3GED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101655 for 1914 contacts (-53.1/contact) +
2D Compatibility (PS) -24233 + (NN) -3638 + (LL) 2368
1D Compatibility (HY) -19200 + (ID) 3550
Total energy: -149908.0 ( -78.32 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_3GED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GED-query.scw
PDB file :
Tito_Scwrl_3GED.pdb
: