Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LDKTKRKMIYETFMLILILLSLALLPYRNNFTFILNWIIWVIFTLDYLVRLYRADNKWHYVKTHPFQLIAIIPFYGGFRAARIVSFVHLLSITAMGRRYIVPIYSFFRSNGLNRFLMIFVLLVIIIPVPMVFIE------PEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRAKKPTNSSTQRANKITQLISETPDLTKEEIAVVEQFLTLRKKELADENTKSDSE |
1JVM Chain:A ((24-120)) | -----------------------------------------------------------------------------------------------------------LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQE------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85223 for 614 contacts (-138.8/contact) +
2D Compatibility (PS) -9389 + (NN) -1485 + (LL) 14324
1D Compatibility (HY) -10400 + (ID) 1400
Total energy: -93573.0 ( -152.40 by residue)
QMean score : 0.243
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