Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVTHSKNGYYDGLIFHRVIPEFMIQGGDPDGRGTGGESIWGESFEDEFSTEAF-NLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEG-MDVVDEIANLPTGMQDKPVNDVVIEKINIK
2HQ6 Chain:A ((21-179))
----------PPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRAD---------------------------ELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVL
General information:
TITO was launched using:
RESULT:
Template:
2HQ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62324 for 1262 contacts (-49.4/contact) +
2D Compatibility (PS) -16274 + (NN) -4543 + (LL) 2280
1D Compatibility (HY) -8800 + (ID) 3050
Total energy: -92711.0 ( -73.46 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_2HQ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HQ6-query.scw
PDB file :
Tito_Scwrl_2HQ6.pdb
: