Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRL--TEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
2BTM Chain:A ((1-250))
-RKPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAAD--GTDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPASFLQLVEAGR
General information:
TITO was launched using:
RESULT:
Template:
2BTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118396 for 2197 contacts (-53.9/contact) +
2D Compatibility (PS) -27281 + (NN) -13612 + (LL) 364
1D Compatibility (HY) -25600 + (ID) 8100
Total energy: -192625.0 ( -87.68 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_2BTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BTM-query.scw
PDB file :
Tito_Scwrl_2BTM.pdb
: