Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKQYDYIVIGGGSAGSGTANRAAMYGAKVLLIEGGQ-VGGTCVNLGCVPKKIMWYGAQVSETLHKYSS--GYGFEVNNLNFDFTTLKANRDAYVQRSRQSYAANFERNG-VEKIDGFARFID---NHTIEVNGQQYKAPHITIATGGHPLYPDIIGSELGETSDDFFGWETLPD---------SILIVGAGYIAAELAGVVNE-LGVETHLAFRKDHILRGFDDMVTSEVMAEMEKSGISLHANHVPKSLKRDEGGKLIFEAENG--KTLVVDRVIWAIGRGPNVDM-GLENTDIVLNDKGYIKTDEFENTSVDGVYAIGDVNGKI-ALTPVAIAAGRRLSERLFNHKDNE---KLDYHNVPSVIFTHPVIGTVGLSEAAAIEQFGEDNIKVYTSTFTSM--YTAVTTNRQAVKMKLITLGKEEKVIGLHGVGYGIDEMIQGFSVAIKMGATKADFDDTVAIHP---TGSEEFVTMR |
| 1GER Chain:A ((3-450)) | --KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTI--NKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIK-GFARFV-DAK--TLEVNGETITADHILIATGGRPSHPD---IP-GV--EYGID---SDGFFALPALPERVAVVGAGYIAVELAGVINGL-GAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELED-GRSET-VDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGA-VELTPVAVAAGRRLSERLFN---NKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTA-MYTAVTTHR-QPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNT--VAIHPT-AAEEFVTMR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GER.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200635 for 3480 contacts (-57.7/contact) +
2D Compatibility (PS) -45521 + (NN) -6409 + (LL) 1828
1D Compatibility (HY) -36400 + (ID) 11000
Total energy: -298137.0 ( -85.67 by residue)
QMean score : 0.556
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