Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLDTQQIKEIIPHRYPFLLVDRITEVEEGKRAKGYKNVTANEEFFNGHFPQYPVMPGVLIVEALAQVGAVAMLIK------EENRGRLAFFAGIDNCRFKKQVKPGDQLHLEVEIIRARGTIGRGKGVATVDGEVVCEVELTFALGE
3DP3 Chain:D ((15-157))----EHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAE


General information:
TITO was launched using:
RESULT:

Template: 3DP3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 640 -40764 -63.69 -297.54
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain D : 0.83

3D Compatibility (PKB) : -63.69
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.563

(partial model without unconserved sides chains):
PDB file : Tito_3DP3.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3DP3-query.scw
PDB file : Tito_Scwrl_3DP3.pdb: