Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAAL-AASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPT----LAGGPFDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGILAES-DDADAVAARRTLQMMGEHPGLDATAIQTVGRKGWDGFALALVR
3CBG Chain:A ((15-232))
--KGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAP-MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLG-----DGMTLALKK
General information:
TITO was launched using:
RESULT:
Template:
3CBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138256 for 1759 contacts (-78.6/contact) +
2D Compatibility (PS) -23234 + (NN) -12181 + (LL) 112
1D Compatibility (HY) -12800 + (ID) 3200
Total energy: -189559.0 ( -107.77 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_3CBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CBG-query.scw
PDB file :
Tito_Scwrl_3CBG.pdb
: