Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1BS4 Chain:A ((1-168))
-SVLQVLHIPDERLRKVAKPVE-----EVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRD----ERLVLINPELLEKS------GETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKARA-------------
General information:
TITO was launched using:
RESULT:
Template:
1BS4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68343 for 1285 contacts (-53.2/contact) +
2D Compatibility (PS) -18113 + (NN) -4351 + (LL) 900
1D Compatibility (HY) -12400 + (ID) 2650
Total energy: -104957.0 ( -81.68 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_1BS4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BS4-query.scw
PDB file :
Tito_Scwrl_1BS4.pdb
: