Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTVRVGDPELVLDPYDYDFHEDPYPYYRRLRDEAPLYRNE------ERNFWAVSRHHDVLQGFRDSTALSNAYGVSLDPSSRTSEAYRVMSMLAMDDPAHLRMRTLVSKGFTPRRIRELEPQVLELARIHLDSALQ---TESFDFVAEFAGKLPMDVISELIGVPDTDRARIRALADAVLHREDGVADVPPPA-MAASIELMRYYADLIAEFRRRPANNLTSALLAAELDGDRLSDQEIMAFLFLMVIAGNETTTKLLANAVYWAAHHPGQLARVFADHSR-IPMWVEETLRYDTSSQILARTVAHDLTLYDTTIPEGEVLLLLPGSANRDDRVFDDPDDYRIGREIGCKLVSFGS-GAHFCLGAHLARMEARVALGALLRRIRNYEVDDDNVVRVHSSNVRGFAHLPISVQAR |
2WM5 Chain:A ((45-435)) | ---------------------VRDGAFATLRREAPISFWPTIELVAGNGHWALTKYDDVFYASRHPDIFSSYPNITINDQTPELAEY-FGSMIVLDDPRHQRLRSIVSRAFTPKVVARIEAAVRDRAHRLVSSMIANNPDRQADLVSELAGPLPLQIICDMMGIPKADHQRIFHWTNVILGFGDPDLATDFDEFMQVSADIGAYATALAEDRRVNHHDDLTSSLVEAEVDGERLSSREIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWWSDFDGLAPTAVEEIVRWASPVVYMRRTLTQDIELRGTKMAAGDKVSLWYCSANRDESKFADPWTFDLARNP-NPHLGFGGGGAHFCLGANLARREIRVAFDELRRQMPDVVATEEPARL-LSQFIHGIKTLPVTWS-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2WM5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -225219 for 3126 contacts (-72.0/contact) +
2D Compatibility (PS) -41007 + (NN) -18303 + (LL) 1464
1D Compatibility (HY) -21200 + (ID) 6000
Total energy: -310265.0 ( -99.25 by residue)
QMean score : 0.522
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