Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMRFLDG-HPPGYDLTYNDVFIVPNRSEVASRFDVDLSTA--DGSGTTIPVVVANMTAVAGRRMAETVARRGGIVILPQDLPIPAVKQT-VAFVKSRDLVLDTPVTLAPDDSVSDAMALIHKRAHGVAVVILEGRPIGLVRESSCLGVDRFTRVRDIAVTDYVTAPAGTEPRKIFDLLEHAPVDVAVLTDADGTLAGVLSRTGAIRAGIYTPATDS-AGRLRIGAAVGINGDVGAKARALAEAGVDVLVIDTAHGHQVKTLDAIKAVSALDLGLPLAAGNVVSAEGTRDLLKAGANVVKVGVGPGAMCTTRMMTGVGRPQFSAVLECASAARQLGGHIWADGGIRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDDQPYKESYGMASKRAVVARTGADNPFD-RARKALFEEGISTSRMGLDPDRGGVEDLIDHITSGVRSTCTYVGASNLAELHERAVVGVQSGAGFAEGHPLPAGW |
| 2CU0 Chain:A ((3-474)) | --KFVEKLEKAIKGYTFDDVLLIPQATEVE-PKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAE---------------------------------------------------------------------------------------------------------------KYKNAVRDENGELLVAAAV--SPFDIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQK-VDADFIVGNIANPKAVDDL--TFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVI-INGRKYKQYRGMGSLGAMMK---------YMKTRKFVPEGVEG----VVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGEFVIITHAGIKESHPHDIII |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2CU0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -200783 for 3068 contacts (-65.4/contact) +
2D Compatibility (PS) -37171 + (NN) -12644 + (LL) 7956
1D Compatibility (HY) -26800 + (ID) 5950
Total energy: -275392.0 ( -89.76 by residue)
QMean score : 0.526
|
|
|