Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDT-TWVSVRWYRPGGPLTAQQVGQQYLAIVLGGITKEGV
2PBX Chain:A ((5-200))
IEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFLTDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSAS-TRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDVDNMASLFHGIFYSIFLQVNRLGEQEAVYKLADSYLNMLCI-------
General information:
TITO was launched using:
RESULT:
Template:
2PBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94902 for 1406 contacts (-67.5/contact) +
2D Compatibility (PS) -20704 + (NN) -7862 + (LL) 448
1D Compatibility (HY) -11600 + (ID) 1650
Total energy: -136270.0 ( -96.92 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_2PBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PBX-query.scw
PDB file :
Tito_Scwrl_2PBX.pdb
: