Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEE-TQISQELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFEIINWNKVNELYQAAKA
2NYB Chain:A ((1-191))
-SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIR-------SSEGGVFNNAAEVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA---
General information:
TITO was launched using:
RESULT:
Template:
2NYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96490 for 1508 contacts (-64.0/contact) +
2D Compatibility (PS) -19837 + (NN) -6977 + (LL) 936
1D Compatibility (HY) -18400 + (ID) 4300
Total energy: -145068.0 ( -96.20 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_2NYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NYB-query.scw
PDB file :
Tito_Scwrl_2NYB.pdb
: