Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSVGCPEPEPPRSLTCCGPGTAPGPGAGVPLLTEDMQALTLRTLAASDVTKHYELV-RELGKGTYGKVDLVVYKGTGTKMALKFVNKSKT---KLKNFLREVSITNSLSSSPFIIKVFDVVFETEDCYVFAQEYAPAGDLFDIIPPQ-VGLPEDTVKRCVQQLGLALDFMHGRQLVHRDIKPENVLLFDR-ECRRVKLADFGMTRRVGCRVKRVSGTIPYTAPEVCQAGRADGLAVDTGVDVWAFGVLIFCVLTGNFPWEAASGADAFFEEFVRWQRGRLPGLPSQWRRFTEPALRMFQRLLALEPERRGPAKEVFRFLKHELTSELRRRPSHRARKPPGDRPPAAGPLRLEAPGPLKRTVLTESGSGSRPAPPAVGSVPLPVPVPVPVPVPVPVPEPGLAPQGPPGRTDGRADKSKGQVVLATAIEICV |
| 3LM5 Chain:A ((25-294)) | -----------------------------------------------NFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEV-YENTSEIILILEYAAGGEIFSLCLPELEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKI-------MGTPEYLAPEILNYD-----PITTATDMWNIGIIAYMLLTHTSPFVGED----NQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEIC---LSHSWLQQWDFENL-------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LM5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -157824 for 1974 contacts (-80.0/contact) +
2D Compatibility (PS) -26805 + (NN) -14368 + (LL) 4112
1D Compatibility (HY) -22000 + (ID) 3500
Total energy: -220385.0 ( -111.64 by residue)
QMean score : 0.554
|
|
|