Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDDFIRIKGAREHNLQGVDVNIPKNKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLNIQDKPDVESITGLSPAISINQKSISKNPRSTVGTVTEIYDYLRLMYARIGIPYSPATGLPIAKQTVSQIVDTIMALPLETKIYILAPIVRGRKGEHLKEILEIKKQGYVRLKIDGEVHNIDDLPKLDENKKHNIFVVADRILVSDNIGNRLPSSIESALRLGHGLMYAEIMSLPDNHNSEYKDGQILTFSENFACPESGFTLEELEPRLFSFNSPYGACYLCNGLGKKLDIDIKLIVPDETLSISEGALRPVGSMSRQVHASYGFLKSAILSLAENRKFSLDIPWKNIDQKVKNVILFGSKETKFRGLVGILENQIDYDETLIERYCSVANCKECVGFRIRKEALTVKIDGRHIGEISRLSIDEFLKWFENLPSKLTEQQKQISNKILNEIIKRLTFLKNVGLNYLTLDRESSTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQCDNDRLIATLKNLRDMGNTVIVVEHDEDTIM-AADYAIDIGPGAGVNGGKIVAEGTPDQVQRSSKSITGQYLSGKKT----------I--SI--PKR---RKRATQYIKVVNA----CENNLKNIDVEFPIGNLICVTGISGGGKSSLVVETLYKYLARKMYDSSAKYGQCDKIEGLEYID-KIIEIDQSPIGRTPASNPATYVGIFTHVRNWFAGLPESKARGYNIGRFSFNTKGGRCEACKGDGHLRVEMHFLPDVYVKCEQCKGRRYNRETLEVTYKGKSVSDVLDMTIDQACDFFDNLPMVKEKLVSLQEVGLGYIKLGQPSTTLSGGEAQRIKLSRELSKRSTGRTLYILDEPTTGLHFEDVNNLLKILHKLVD-LGNTVIVIEHNLHVIK-TADYIIDIGPEGGMKGGKVVATGTPEEIIDIPESITGKYLKPYLSKLIKV |
| 3J16 Chain:B ((204-559)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RYIKILQLEN-VLKRDIEKLSGGELQRFAIGMSCVQEAD--VYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY-GVVTLPASVREGI-------NIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA---------------LKPDEGQDIPKLNVSMKPQKIA-------------------P----------------KFP--------------------------------------------------GTVRQLFFKKIRGQ---FLN-P--QFQTDVVKPLRIDD-IIDQEVQHLSGGELQRVAIVLALGIP---ADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG----IPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J16.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52231 for 2503 contacts (-20.9/contact) +
2D Compatibility (PS) -36207 + (NN) -12300 + (LL) 36480
1D Compatibility (HY) -15200 + (ID) 3700
Total energy: -83158.0 ( -33.22 by residue)
QMean score : 0.394
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