Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKIGVCGPVGSGKTALIEALTRHMSK-DYDMAVITNDIYTKEDAEFMCKNSVMPRDRIIGVETGGCPHTAIREDASMNLEAVEEMHGRF--PNLELLLIESGGDNLS-----A----TFNPELADFTIFVIDVAEGDKIPRKGG--PGITRSDLLVINKIDLAPYVGADLKVMERDSKKMRGEKPFIFTNIRAKEGLDDVIAWIKRNALLED
3E70 Chain:C ((130-318))
-YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADP-----------AAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSI----SY--VIDAPILFVG--VGQGYDDLRPFEKEWFLERI
General information:
TITO was launched using:
RESULT:
Template:
3E70.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56723 for 1431 contacts (-39.6/contact) +
2D Compatibility (PS) -18650 + (NN) -8455 + (LL) 1936
1D Compatibility (HY) -4000 + (ID) 1800
Total energy: -87692.0 ( -61.28 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3E70.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E70-query.scw
PDB file :
Tito_Scwrl_3E70.pdb
: