Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIKTYDIKEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQGGCPYGTGTGGP-----EHRIKCEVAHNPNKHQ-RGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITS-AESLSVLDKIKQGDIIES-VVFSPSL
3BKP Chain:A ((15-183))
----------YFQGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETH-PRLKFRYRGLVGVANLG--TNGNQFFITLARADVLNNAYTLFGKVTGHT--LYNLMKFNDLEVGKEDRPMTPPF
General information:
TITO was launched using:
RESULT:
Template:
3BKP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82418 for 1081 contacts (-76.2/contact) +
2D Compatibility (PS) -15587 + (NN) -6707 + (LL) 880
1D Compatibility (HY) -7600 + (ID) 2400
Total energy: -113832.0 ( -105.30 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_3BKP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BKP-query.scw
PDB file :
Tito_Scwrl_3BKP.pdb
: