Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIRKIAIAALSVVVAGSLLTACGGGNSKSDDNGKTKVTFWAAPNPTQVKYWDEMAKAYEKENPDVTIEVSQMKESPSSEATIQSAIASKTAPTMSENINRSFAAQLADSKAIVPLNDVKGLDDVVKERNMSETMDSWKFSDGNQYVLPVYSNPILFAWRLDTLKELGYDAPPKTYSEALEVGKKLKAKYPDKVLWAKGDLSDPTAWMRWFDFFPLYDAASKGNAFVE-D-------GKLVADDKAGTELLTFMSELQKNK-LLLAS----KATDPFETGTSIMADNGPWTFPNWDEKFPELKYNENYAITAPLVPDSMVNEENVATYADSKGVVMYAQATDKEKEAAMDFLKFVYNDDKNDLKFLETTNLIPARDDATENETFTAFFKENPELEVYAANVPYSIPAMDDAKYNDIQQIIGEEAWNPIVRGE-KKPTKAWSDMKKAEDGVLQE |
2GH9 Chain:A ((2-379)) | ------------------------------------KITVWTHFGGPELEWLKEQARTFER-TSGTKVEVVEVPF-AEIKQKFILGAPQGQAADLVVTVPHDWVGEMAQAGVLEPVGKYVTQ-A-YLADLQGVAVEAFTF-GGRLMGLPAFAESVALIYNKKYVKE-----PPRTWEEFLALAQKLTTGAT----FGFLYNIGDPYF--NF----GFFKAFGAENVFAKDAKGNLDPTKLLIGGEVGEKALQFIKDLRFKYNLVPEGVDYGVADGAFKDGALAMILNGPWALGDYKKA----K--VDFGIAPFPVPPGAK--NPWGPFLGVQGVVVNAYSKN--KTQAVNFAKTLVTGR-NLVAFNQAGGRIPVSKSAVKQLE------KDPVVAGFSKVFPLGAPMPNIPEMGKVWGPWGN-AISLAIQRPDSNVKKIVEDMVAEIKKAIG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GH9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48589 for 3202 contacts (-15.2/contact) +
2D Compatibility (PS) -38985 + (NN) -16217 + (LL) 4320
1D Compatibility (HY) -19200 + (ID) 3350
Total energy: -122021.0 ( -38.11 by residue)
QMean score : 0.367
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