Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LNVRANRVSEQMKKELGDILNRKIKDPRLGFVTVTGVDVTGDLQEAKVFISILGTDKEKENTLLALAKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYGNRIDELLRDLNNDQ
2DYJ Chain:A ((4-94))
---GKAHLEAQLKRALAEEIQA-LEDPRLFLLTVEAVRLSKDGSVLSVYVEAFR---EEEGALRALSRAERRLVAALARRVRMRRLPRLEFLPWRASP----------------
General information:
TITO was launched using:
RESULT:
Template:
2DYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63758 for 652 contacts (-97.8/contact) +
2D Compatibility (PS) -9624 + (NN) -3210 + (LL) 1000
1D Compatibility (HY) -6800 + (ID) 1200
Total energy: -83592.0 ( -128.21 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_2DYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DYJ-query.scw
PDB file :
Tito_Scwrl_2DYJ.pdb
: