Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVTHSKNGYYDGLIFHRVIPEFMIQGGDPDGRGTGGESIWGESFEDEFSTEAFN-LRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTG-MQDKPVNDVVIEKINIK
2OK3 Chain:A ((3-155))
----------------VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQP---------------------------HLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH
General information:
TITO was launched using:
RESULT:
Template:
2OK3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48462 for 1176 contacts (-41.2/contact) +
2D Compatibility (PS) -15892 + (NN) -6756 + (LL) 2616
1D Compatibility (HY) -12400 + (ID) 3800
Total energy: -84694.0 ( -72.02 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_2OK3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OK3-query.scw
PDB file :
Tito_Scwrl_2OK3.pdb
: