Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRHADADILKRHYAELTDRPFFPTLVDYMTSGPVIIEVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN----------------
1NDL Chain:A ((2-153))
AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRN-----IIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE
General information:
TITO was launched using:
RESULT:
Template:
1NDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64639 for 992 contacts (-65.2/contact) +
2D Compatibility (PS) -14264 + (NN) -5992 + (LL) 292
1D Compatibility (HY) -15200 + (ID) 3600
Total energy: -103403.0 ( -104.24 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1NDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NDL-query.scw
PDB file :
Tito_Scwrl_1NDL.pdb
: