Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR-HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS-------------
2RMC Chain:A ((1-182))
--KRGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKG--------Y----GYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANA-GPDTNGSQFFITLTKPTWLDG-KHVVFGKVLD--GMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVKTPFVVEVPDW
General information:
TITO was launched using:
RESULT:
Template:
2RMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57678 for 1289 contacts (-44.7/contact) +
2D Compatibility (PS) -17852 + (NN) -11891 + (LL) 464
1D Compatibility (HY) -9200 + (ID) 3450
Total energy: -99607.0 ( -77.27 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_2RMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RMC-query.scw
PDB file :
Tito_Scwrl_2RMC.pdb
: