Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1G2A Chain:A ((1-164))
-SVLQVLHIPDERLRKVAKPVE-----EVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENR----DERLVLINPELLEKS------GETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL-----------------
General information:
TITO was launched using:
RESULT:
Template:
1G2A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69614 for 1268 contacts (-54.9/contact) +
2D Compatibility (PS) -17683 + (NN) -4548 + (LL) 1000
1D Compatibility (HY) -13200 + (ID) 2650
Total energy: -106695.0 ( -84.14 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_1G2A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G2A-query.scw
PDB file :
Tito_Scwrl_1G2A.pdb
: