Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFTHR
4FZW Chain:A ((5-258))
---SELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFKGR
General information:
TITO was launched using:
RESULT:
Template:
4FZW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118804 for 2071 contacts (-57.4/contact) +
2D Compatibility (PS) -27950 + (NN) -11377 + (LL) 352
1D Compatibility (HY) -18800 + (ID) 5600
Total energy: -182179.0 ( -87.97 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_4FZW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FZW-query.scw
PDB file :
Tito_Scwrl_4FZW.pdb
: