Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVHGFLLERVSVVRDE---ATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSGKVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPD--LPEGRVTELLARLCLGQSA----------------REAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA
4F4C Chain:A ((1076-1275))
----KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRN-----------PKILLLDEATSALDTESEKVVQEALDR--A-REGRTCIVIAHR----------------------
General information:
TITO was launched using:
RESULT:
Template:
4F4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129886 for 1320 contacts (-98.4/contact) +
2D Compatibility (PS) -19579 + (NN) -9391 + (LL) 4036
1D Compatibility (HY) -5200 + (ID) 1750
Total energy: -161770.0 ( -122.55 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_4F4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F4C-query.scw
PDB file :
Tito_Scwrl_4F4C.pdb
: