Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIV-DSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLA----SQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDT-TWVSVRWYRPGGPLTAQQVGQQYLAIVLGGITKEGV---
2UXU Chain:A ((5-210))
---TKEEAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLHETHDHLARASESEDEVDPLGCMRKLLLQVFNELVLDARTRRINEILHHKCEFTDDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLPGELDAERAAVAMFAYVDGLIRRWLLLPDSVDLLGDVEKWVDTGLDMLRLSPALRK
General information:
TITO was launched using:
RESULT:
Template:
2UXU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103833 for 1423 contacts (-73.0/contact) +
2D Compatibility (PS) -20913 + (NN) -8579 + (LL) 232
1D Compatibility (HY) -2000 + (ID) 1800
Total energy: -136893.0 ( -96.20 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_2UXU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UXU-query.scw
PDB file :
Tito_Scwrl_2UXU.pdb
: