Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFY-RSVDALLIDDIQFFARKER---SQEEFFHTFNALL---EGGQQVILTSDRYPKEIEGLEERLKS--RFGWGLTVAVEPPELETRVAILMKKAEQAKIELPHDAAFFIAQRIRSN-VRELEGALKRVIAHSHFMG-RPITIELIRESLKDLLALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT |
| 1IY2 Chain:A ((72-276)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK--NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP---DILDPALLRPGRF--DRQIAIDAPDVKGREQILRIHARGKPL-AEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IY2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97781 for 1406 contacts (-69.5/contact) +
2D Compatibility (PS) -20080 + (NN) -13484 + (LL) 21904
1D Compatibility (HY) -4800 + (ID) 2050
Total energy: -116291.0 ( -82.71 by residue)
QMean score : 0.476
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