Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSE-PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
1G2A Chain:A ((1-164))
-SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVS-ENRDERLVLINPELLEKS-GETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLS--PLKQQRIRQKVEKLDRL
General information:
TITO was launched using:
RESULT:
Template:
1G2A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49971 for 1258 contacts (-39.7/contact) +
2D Compatibility (PS) -17432 + (NN) -4969 + (LL) 644
1D Compatibility (HY) -16800 + (ID) 4150
Total energy: -92678.0 ( -73.67 by residue)
QMean score : 0.682
(partial model without unconserved sides chains):
PDB file :
Tito_1G2A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G2A-query.scw
PDB file :
Tito_Scwrl_1G2A.pdb
: