Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPVEALFQPFRLGALELPTRVVMAPMTRNFSPGGVPNAKVVEYYRRRAAAGVGLIVSEGTTVGHKAANGYPNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPDASVPGYGPMEKAKD--GKVLVHGMSKADIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWEGSNQRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWKQQDY-SARLVETP-EGLREFLAPLVEAGVDIFHCSTRRFWIPE-------FEGSELN--LAGWTRELTGKPTITVGNVGLDGSEFLQFFGKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSREALASLV |
| 1O94 Chain:A ((2-345)) | RDPKHDILFEPIQIGPKTLRNRFYQVPHCIGAGSDK--PGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGALAGVELWYGGAHAPNME--SRATP-RGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTV--YGPGQI--EAEVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDP------------EKMI--------EIVTKGYADIIGCARPSIADPFLPQKVEQGRYDDIRVCIGCNVCISR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1O94.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164718 for 3053 contacts (-54.0/contact) +
2D Compatibility (PS) -36579 + (NN) -15811 + (LL) 1092
1D Compatibility (HY) -8800 + (ID) 4200
Total energy: -229016.0 ( -75.01 by residue)
QMean score : 0.506
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