Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEPIISIQGLHKSFGKNE---VLKGIDLDIHQGEVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEG-------------IDITDKKNDIFKMREKMGMVFQQFNLFPNMTVLENITLSPIK--TKGLSKLDAQTKAYELLEKVGLKEKANAY--PASLSGGQQQRIAIARGLAM-NPDVLLFDEPTSALDPEMVGEVLTVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDA-GIIVEQGTPKEVFEQTKEIRTRDFLSKVL-------
1B0U Chain:A ((5-261))
---NKLHVIDLHKRYGG--HEVLK-GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT-R-LTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQG-KYPVHLSGGQQQRVSIARALAME-PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH-QGKIEEEGDPEQVFGNP-Q--SPRLQQFLKGSLKKLE
General information:
TITO was launched using:
RESULT:
Template:
1B0U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151247 for 1821 contacts (-83.1/contact) +
2D Compatibility (PS) -25156 + (NN) -13703 + (LL) 1396
1D Compatibility (HY) -22400 + (ID) 5950
Total energy: -217060.0 ( -119.20 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_1B0U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B0U-query.scw
PDB file :
Tito_Scwrl_1B0U.pdb
: